Pesquisa | BVS IEC

1.

Co-optation of Tandem DNA Repeats for the Maintenance of Mesenchymal Identity.

Balestrieri, Chiara; Alfarano, Gabriele; Milan, Marta; Tosi, Valentina; Prosperini, Elena; Nicoli, Paola; Palamidessi, Andrea; Scita, Giorgio; Diaferia, Giuseppe R; Natoli, Gioacchino.

Cell ; 173(5): 1150-1164.e14, 2018 05 17.

Artigo em Inglês | MEDLINE | ID: mdl-29706544

2.

Genomic Hallmarks and Structural Variation in Metastatic Prostate Cancer.

Quigley, David A; Dang, Ha X; Zhao, Shuang G; Lloyd, Paul; Aggarwal, Rahul; Alumkal, Joshi J; Foye, Adam; Kothari, Vishal; Perry, Marc D; Bailey, Adina M; Playdle, Denise; Barnard, Travis J; Zhang, Li; Zhang, Jin; Youngren, Jack F; Cieslik, Marcin P; Parolia, Abhijit; Beer, Tomasz M; Thomas, George; Chi, Kim N; Gleave, Martin; Lack, Nathan A; Zoubeidi, Amina; Reiter, Robert E; Rettig, Matthew B; Witte, Owen; Ryan, Charles J; Fong, Lawrence; Kim, Won; Friedlander, Terence; Chou, Jonathan; Li, Haolong; Das, Rajdeep; Li, Hui; Moussavi-Baygi, Ruhollah; Goodarzi, Hani; Gilbert, Luke A; Lara, Primo N; Evans, Christopher P; Goldstein, Theodore C; Stuart, Joshua M; Tomlins, Scott A; Spratt, Daniel E; Cheetham, R Keira; Cheng, Donavan T; Farh, Kyle; Gehring, Julian S; Hakenberg, Jörg; Liao, Arnold; Febbo, Philip G.

Cell ; 174(3): 758-769.e9, 2018 07 26.

Artigo em Inglês | MEDLINE | ID: mdl-30033370

3.

The complete sequence of a human Y chromosome.

Rhie, Arang; Nurk, Sergey; Cechova, Monika; Hoyt, Savannah J; Taylor, Dylan J; Altemose, Nicolas; Hook, Paul W; Koren, Sergey; Rautiainen, Mikko; Alexandrov, Ivan A; Allen, Jamie; Asri, Mobin; Bzikadze, Andrey V; Chen, Nae-Chyun; Chin, Chen-Shan; Diekhans, Mark; Flicek, Paul; Formenti, Giulio; Fungtammasan, Arkarachai; Garcia Giron, Carlos; Garrison, Erik; Gershman, Ariel; Gerton, Jennifer L; Grady, Patrick G S; Guarracino, Andrea; Haggerty, Leanne; Halabian, Reza; Hansen, Nancy F; Harris, Robert; Hartley, Gabrielle A; Harvey, William T; Haukness, Marina; Heinz, Jakob; Hourlier, Thibaut; Hubley, Robert M; Hunt, Sarah E; Hwang, Stephen; Jain, Miten; Kesharwani, Rupesh K; Lewis, Alexandra P; Li, Heng; Logsdon, Glennis A; Lucas, Julian K; Makalowski, Wojciech; Markovic, Christopher; Martin, Fergal J; Mc Cartney, Ann M; McCoy, Rajiv C; McDaniel, Jennifer; McNulty, Brandy M.

Nature ; 621(7978): 344-354, 2023 Sep.

Artigo em Inglês | MEDLINE | ID: mdl-37612512

4.

Tandem repeats in giant archaeal Borg elements undergo rapid evolution and create new intrinsically disordered regions in proteins.

Schoelmerich, Marie Charlotte; Sachdeva, Rohan; West-Roberts, Jacob; Waldburger, Lucas; Banfield, Jillian F.

PLoS Biol ; 21(1): e3001980, 2023 01.

Artigo em Inglês | MEDLINE | ID: mdl-36701369

5.

Genome-wide detection of tandem DNA repeats that are expanded in autism.

Trost, Brett; Engchuan, Worrawat; Nguyen, Charlotte M; Thiruvahindrapuram, Bhooma; Dolzhenko, Egor; Backstrom, Ian; Mirceta, Mila; Mojarad, Bahareh A; Yin, Yue; Dov, Alona; Chandrakumar, Induja; Prasolava, Tanya; Shum, Natalie; Hamdan, Omar; Pellecchia, Giovanna; Howe, Jennifer L; Whitney, Joseph; Klee, Eric W; Baheti, Saurabh; Amaral, David G; Anagnostou, Evdokia; Elsabbagh, Mayada; Fernandez, Bridget A; Hoang, Ny; Lewis, M E Suzanne; Liu, Xudong; Sjaarda, Calvin; Smith, Isabel M; Szatmari, Peter; Zwaigenbaum, Lonnie; Glazer, David; Hartley, Dean; Stewart, A Keith; Eberle, Michael A; Sato, Nozomu; Pearson, Christopher E; Scherer, Stephen W; Yuen, Ryan K C.

Nature ; 586(7827): 80-86, 2020 10.

Artigo em Inglês | MEDLINE | ID: mdl-32717741

6.

Advancing genomic technologies and clinical awareness accelerates discovery of disease-associated tandem repeat sequences.

Gall-Duncan, Terence; Sato, Nozomu; Yuen, Ryan K C; Pearson, Christopher E.

Genome Res ; 32(1): 1-27, 2022 01.

Artigo em Inglês | MEDLINE | ID: mdl-34965938

7.

Structural peculiarities of tandem repeats and their clinical significance.

Bachurin, Stanislav S; Yurushkin, Mikhail V; Slynko, Ilya A; Kletskii, Mikhail E; Burov, Oleg N; Berezovskiy, Dmitriy P.

Biochem Biophys Res Commun ; 692: 149349, 2024 Jan 15.

Artigo em Inglês | MEDLINE | ID: mdl-38056160

8.

HBD1 protein with a tandem repeat of two HMG-box domains is a DNA clip to organize chloroplast nucleoids in Chlamydomonas reinhardtii.

Takusagawa, Mari; Kobayashi, Yusuke; Fukao, Yoichiro; Hidaka, Kumi; Endo, Masayuki; Sugiyama, Hiroshi; Hamaji, Takashi; Kato, Yoshinobu; Miyakawa, Isamu; Misumi, Osami; Shikanai, Toshiharu; Nishimura, Yoshiki.

Proc Natl Acad Sci U S A ; 118(20)2021 05 18.

Artigo em Inglês | MEDLINE | ID: mdl-33975946

9.

Unbiased identification of signal-activated transcription factors by barcoded synthetic tandem repeat promoter screening (BC-STAR-PROM).

Gosselin, Pauline; Rando, Gianpaolo; Fleury-Olela, Fabienne; Schibler, Ueli.

Genes Dev ; 30(16): 1895-907, 2016 08 15.

Artigo em Inglês | MEDLINE | ID: mdl-27601530

10.

ITDetect: a method to detect internal tandem duplication of FMS-like tyrosine kinase (FLT3) from next-generation sequencing data with high sensitivity and clinical application.

Lee, Sungyoung; Sun, Choong-Hyun; Jang, Heejun; Kim, Daeyoon; Yoon, Sung-Soo; Koh, Youngil; Na, Seung Chan; Cho, Sung Im; Kim, Man Jin; Seong, Moon-Woo; Byun, Ja Min; Yun, Hongseok.

BMC Bioinformatics ; 24(1): 62, 2023 Feb 23.

Artigo em Inglês | MEDLINE | ID: mdl-36823555

11.

Genome (in)stability at tandem repeats.

Balzano, Elisa; Pelliccia, Franca; Giunta, Simona.

Semin Cell Dev Biol ; 113: 97-112, 2021 05.

Artigo em Inglês | MEDLINE | ID: mdl-33109442

12.

The repetitive structure of DNA clamps: An overlooked protein tandem repeat.

Arrías, Paula Nazarena; Monzon, Alexander Miguel; Clementel, Damiano; Mozaffari, Soroush; Piovesan, Damiano; Kajava, Andrey V; Tosatto, Silvio C E.

J Struct Biol ; 215(3): 108001, 2023 09.

Artigo em Inglês | MEDLINE | ID: mdl-37467824

13.

A STRP-ed definition of Structured Tandem Repeats in Proteins.

Monzon, Alexander Miguel; Arrías, Paula Nazarena; Elofsson, Arne; Mier, Pablo; Andrade-Navarro, Miguel A; Bevilacqua, Martina; Clementel, Damiano; Bateman, Alex; Hirsh, Layla; Fornasari, Maria Silvina; Parisi, Gustavo; Piovesan, Damiano; Kajava, Andrey V; Tosatto, Silvio C E.

J Struct Biol ; 215(4): 108023, 2023 12.

Artigo em Inglês | MEDLINE | ID: mdl-37652396

14.

Born in the mitochondrion and raised in the nucleus: evolution of a novel tandem repeat family in Medicago polymorpha (Fabaceae).

Choi, In-Su; Wojciechowski, Martin F; Steele, Kelly P; Hunter, Sarah G; Ruhlman, Tracey A; Jansen, Robert K.

Plant J ; 110(2): 389-406, 2022 04.

Artigo em Inglês | MEDLINE | ID: mdl-35061308

15.

Humanization of a tandem repeat in IG-DMR causes stochastic restoration of paternal imprinting at mouse Dlk1-Dio3 domain.

Hara, Satoshi; Terao, Miho; Tsuji-Hosokawa, Atsumi; Ogawa, Yuya; Takada, Shuji.

Hum Mol Genet ; 30(7): 564-574, 2021 05 12.

Artigo em Inglês | MEDLINE | ID: mdl-33709141

16.

Evolution of a Human-Specific Tandem Repeat Associated with ALS.

Course, Meredith M; Gudsnuk, Kathryn; Smukowski, Samuel N; Winston, Kosuke; Desai, Nitin; Ross, Jay P; Sulovari, Arvis; Bourassa, Cynthia V; Spiegelman, Dan; Couthouis, Julien; Yu, Chang-En; Tsuang, Debby W; Jayadev, Suman; Kay, Mark A; Gitler, Aaron D; Dupre, Nicolas; Eichler, Evan E; Dion, Patrick A; Rouleau, Guy A; Valdmanis, Paul N.

Am J Hum Genet ; 107(3): 445-460, 2020 09 03.

Artigo em Inglês | MEDLINE | ID: mdl-32750315

17.

Comprehensive review and evaluation of computational methods for identifying FLT3-internal tandem duplication in acute myeloid leukaemia.

Yuan, Danyang; He, Xiaoyu; Han, Xinyin; Yang, Chunyan; Liu, Fei; Zhang, Shuying; Luan, Haijing; Li, Ruilin; He, Jiayin; Duan, Xiaohong; Wang, Dongliang; Zhou, Qiming; Gao, Sujun; Niu, Beifang.

Brief Bioinform ; 22(5)2021 09 02.

Artigo em Inglês | MEDLINE | ID: mdl-33851200

18.

Genome Evolution in Arabideae Was Marked by Frequent Centromere Repositioning.

Mandáková, Terezie; Hlousková, Petra; Koch, Marcus A; Lysak, Martin A.

Plant Cell ; 32(3): 650-665, 2020 03.

Artigo em Inglês | MEDLINE | ID: mdl-31919297

19.

A new type of tandem repeats in Myotis petax (Chiroptera, Vespertilionidae) mitochondrial control region.

Gorobeyko, Uliana Vasilievna; Sheremetyeva, Irina Nikolaevna; Kazakov, Denis Vasilievich; Guskov, Valentin Yurievich.

Mol Biol Rep ; 50(6): 5137-5146, 2023 Jun.

Artigo em Inglês | MEDLINE | ID: mdl-37115485

20.

Mechanism of tandem duplication formation in BRCA1-mutant cells.

Willis, Nicholas A; Frock, Richard L; Menghi, Francesca; Duffey, Erin E; Panday, Arvind; Camacho, Virginia; Hasty, E Paul; Liu, Edison T; Alt, Frederick W; Scully, Ralph.

Nature ; 551(7682): 590-595, 2017 11 30.

Artigo em Inglês | MEDLINE | ID: mdl-29168504

BVS IEC

Instituto Evandro Chagas

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